Monday, October 31, 2016

From DNA to the Stars

My sister Ginny recently learned about telomeres, tiny fuses that cap the end of our chromosomes, protecting them from damage by their neighboring peers.   Every time a cell replicates the fuse shortens until it disappears and the cells die; eventually they all die, and so do we. "I felt really comforted by this," she said. "That we just wear down, nothing we can do about it. We just end." I told Ginny that I had received a similar comfort after getting my DNA results. 

At the urging of my daughter, I had sent my first spit sample to ancestry.com, which has a clever system for family trees that not only allows you to locate and add relatives, but provides links to historical records, if available, which may even have stories about your forebears.

For example, I am directly descended from Miles Standish, referred to as Captain Shrimp by his peers. No longer a Pilgrim icon, famous during my childhood as Pricilla Alden's rejected suitor, he is disappearing into the ashes of history, a nasty, short soldier who stabbed and killed a native chief during peace negotiations. I also discovered John Darby among my forebears, who, when he was about forty, impulsively joined up with a pirate crew one afternoon, leaving his wife and five children.  Unfortunately, he was killed two weeks later by the British militia and was subsequently referred to as the Neophyte Pirate. And, then there was my extended great grandfather Andrew Elliott, a Salem judge who hanged witches and later apologized.


Amused but not necessarily comforted by the human examples of my genetic heritage, I decided to learn more about its medical implications, especially my risk for Alzheimer's, which ravaged my father's brain. So, even though no measures exist to prevent this from happening to me, I sent another saliva vial to 23&me, a site that focuses on physical traits, and then paid five dollars to another site, promethease.com, to pick up my DNA results for additional findings.  Promethease provides more information on disease risk than 23&me by identifying studies that are looking at specific genes.

Using both sites, I learned that I wasn't a carrier of a dozen or so very rare diseases and that I was likely to have blue eyes and wet earwax and I wasn't a photic sneezer.  I'm 4% Neanderthal, which is a higher percentage than that of 99% of the population, and I also have a warrior gene and one that suggests low empathy levels, all of which might produce whimsical impulses for piracy, hanging witches, sticking knives into people, and getting married three times.  

I was relieved to find no APOE4 gene, currently the one most strongly associated with Alzheimer's risk, but it's still early days for research into genetic causes of complicated diseases like this one. Collaboration among other genetic and biologic factors could contribute to brain eating, so I'm still not out of the woods.


It's important to note that drug companies scrambling to transform bad genes with zillion-dollar custom-made pills are funding much of this research. Little money is looking at beneficial genes that might already protect us, because they are unlikely to become cash cows. And even if scads of non-pharma research money were available, studying the microscopic DNA cosmos and figuring out how it hurts or helps us is literally an astronomical task that will take years to sort out.

Sixteen years ago scientists put together the first draft of one entire human genome. Because everyone's genome is roughly like everyone else's, the current way of analyzing an individual's genetic profile is to reference it against that first draft. The results that come back from ancestry and 23&me are mostly about SNPs (single nucleotide polymorphisms), which are single variations on a DNA base.  Their locations on specific genes help supply information on individual physical traits as well as susceptibilities to disease and environmental factors. 

It should be noted, however, that just 20,000 genes, more or less, provide the codes for manufacturing the basic stuff of our life force. They comprise only about 1% of the whole genome and are scattered like planets among 3.2 billion DNA base pairs, most of which form large non-coding patches. A few of these structures have been found to perform key functions, such as switches that turn genes on and off, but, so far, most appear to just float around uselessly, micro-asteroids within the genomic universe.Too add to the complexity, we also have about 14,000 pseudo-genes, which don't code but are inherited from one generation to the other and hang out like freeloading cousins. 

And there are problems in gene duplication.  Think of a malfunctioning book printing press. Sometimes it makes multiple copies of a page.  Sometimes it skips a few, which at best means losing a couple pages (i.e. couple of sentences) in a Henry James novel or, worst case, missing key parts of a Harry Bosch plot.

Bottom line, by the time scientists have doped out all the genetic factors and processes that lead to my Alzheimer's risk, I will have long since personally experienced the answer relevant to my own biologic fate and passed on.

So, to return to the conversation with my sister, where is comfort in all this?  After attempting to puzzle out and failing to understand the science of genetics on any non-superficial level, I was left lying on some mental earth staring at those billion or so DNA bases carrying their light-years of information within their coiling and uncoiling packages, the double helix, dancing to the unceasing music of Irreconcilable Dualities -- digital and analog, particle and wave, male and female, order and chaos, life and death. I experienced the same ecstatic insignificance as I would looking into the dark backdrop of the night. Just as the external stars don't belong to me, neither does my DNA; it is merely renting me as it twirls through my time-space until the last telomere drops off. And if this doesn't comfort you, nothing will.

A few weeks ago, I went to a family reunion, the 90th birthday of my last aunt, one of six sisters who all had various numbers of children, so that I ended up with 24 cousins on my mother's side. So here we were, genetic comrades, most over sixty, eating cake, singing the same schlocky camp songs of our childhood, harboring similar left-wing politics, and locked into matching bone sets, silently sharing our internal histories of Captain Shrimp, hanging judges, and low-browed Neanderthals witnessing their own extinction. It was probably one of the last times we will all be together living and lively, so there was an element of sadness.  But at the end of the evening, our wonderful aunt, on the verge of finality and cloaked in mild dementia for most of the night, looked up at this crowd of children, nieces, and nephews all winding and spiraling about her, and she laughed.

[Note: one terrific way to crash your way through this DNA thicket of information is a series called Game of Genomes, in which Carl Zimmer, the author, decided to get his entire genome analyzed by a number of experts and to write very clearly about it.  (https://www.statnews.com/feature/game-of-genomes/season-one/)]